This program is designated to manage microsatellite dataĮ-Workbench for "databasing", comparative genome analysis. Tool will list all chromatogram files (SCF, ABI, AB1, AB) in the current folder. Tool shows the proportions between nucleotides in a DNA sequence Stand alone Chromatogram Editor with Mutation Detection Software for DNA cloning, sequence analysis and visualisation, Tool for alignment, SNP identification, and PHRAP evaluation.Ī graphic tool to visualize DNA sequences. The free Sequence Scanner Software enables you to view, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers.Ī program for sequence assembly, contig editing, and mutation detection, available for Windows and Mac OS X. SSRHunter 1.3 Simple Sequence Repeat Search tool The ultimate thermodynamic modelling spreadsheet for Excelīe useful in the detection of duplication events in genomes, tracking the "footprints" of evolution, as well as displaying the genetic maps and other aspects of comparative genetics.Īllows to visualize genescan files (.fsa format from ABI PRISM sequencers) and to view the exact peak size.Ī stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases.Īllows graphic manipulation of DNA sequences and sophisticated plasmid drawing options.Ī DNA sequence comparison tool and graphical user interface (GUI) viewer implemented in Perl/Tk.Ī tool for SNP Search and downloading with local management The industry standard software for DNA sequence analysis. (Artemis Comparison Tool) is a DNA sequence comparison viewer based on Artemis. The Quality Scores Tutorial expands on the use of confidence scores in trimming and navigating your sequences.The Java based Molecular Biologist's Workbench.Ī tool for working with and managing nucleotide sequences in multiple formats.Ī software for chromatogram files created by sequencers.ĭNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data.Ī compact, easy to use DNA analysis program, ideal for small-scale sequencing projects.Ī free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. With just a few clicks, you can restore bases to just a few or a few thousand sequences, and get even more control over your sequence trims.Ĭheck out the Trimming Tutorial to learn how to take advantage of these tools. If you want to restore a set number of bases on either or both ends of your trimmed sequences because your trim was too stringent or you want to improve coverage, Batch Revert Trim Ends lets you do just that. Prior to executing a trim, Sequencher displays a graphic representation of the proposed trim, which allows you to even further refine your criteria. Trim to Reference eliminates the ends of sequences that extend beyond an assembled Reference sequence. Trim Vector removes sequence-specific data contaminating the ends of your sequences. Trim Ends removes misleading data from the ends of sequencing fragments. Sequencher provides simple-to-use but powerful tools that help you trim poor quality or ambiguous data: Unless removed by trimming, any of these artifacts will distort your sequence assembly and downstream sequence analysis. Introns and primer sequence frequently flank the sequence of amplified exons. The sequences of clones from DNA libraries frequently contain vector sequence, polyA tails, or other unrelated sequence. Automated DNA sequencers occasionally produce poor quality reads, particularly near the sequencing primer site, and toward the end of longer sequence runs.
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